| 3 Jul 2026 | JP | 生鮮コーヒー豆 CV.PANRITA JAYA GROUP | Pesticide residues | Border rejection |
| 16 Jun 2026 | JP | 生鮮コーヒー豆 CV. TANGKAS | Pesticide residues | Border rejection |
| 14 May 2026 | JP | 生鮮コーヒー豆 PT. MULIASARI PERMAI | Pesticide residues | Border rejection |
| 19 Feb 2026 | JP | 生鮮コーヒー豆 PT.SINAR SAMUDRA GLOBAL | Pesticide residues | Border rejection · Destroyed |
| 19 Feb 2026 | JP | 生鮮コーヒー豆 PT.SINAR SAMUDRA GLOBAL | Pesticide residues | Border rejection · Destroyed |
| 29 Aug 2025 | JP | 生鮮カカオ豆 CV JAPANINDO LESTARI | Pesticide residues | Border rejection · Destroyed |
| 25 Aug 2025 | JP | 生鮮コーヒー豆 CV. HARAPAN BERSAMA | Pesticide residues | Border rejection · Re-exported |
| 1 Aug 2025 | EU | Iprodione and prochloraz in mangosteens from Indonesia | Pesticide residues | Information · potential risk |
| 9 Jun 2025 | JP | 生鮮コーヒー豆 PT. BERINDO JAYA | Pesticide residues | Border rejection |
| 24 Apr 2025 | JP | 生鮮コーヒー豆 IJEN LESTARI | Pesticide residues | Border rejection |
| 27 Feb 2025 | JP | 生鮮コーヒー豆 HASRA COFFEE | Pesticide residues | Border rejection · Re-exported |
| 6 Nov 2024 | JP | 生鮮コーヒー豆 PT.INDONESIA INTERNATIONAL TRADING | Pesticide residues | Border rejection |
| 30 Oct 2024 | EU | Excess of Cypermethrin and Difenoconazole in rambutan from Indonesia | Pesticide residues | Alert · serious |
| 3 Oct 2024 | JP | 生鮮コーヒー豆 PT. OLAM INDONESIA | Pesticide residues | Border rejection |
| 14 Mar 2024 | EU | Unauthorised substances acephate, methamidophos and triazophos in dragon fruit from Indone | Pesticide residues | Information · not serious |
| 14 Jun 2023 | EU | Migration of carbendazim and diuron from cutting board | Pesticide residues | Information · potentially serious |
| 11 Jul 2022 | EU | Unauthorised pesticide residue Anthraqinone in Jasmine tea from Indonesia, via the Netherl | Pesticide residues | Alert · serious |
| 21 Sep 2021 | AU | Soybeans in pod Pt Mitratani Dua Tujuh | Pesticide residues 0.08 mg/kg | Border rejection |
| 22 Jul 2021 | AU | Edamame soybeans in pod Pt Mitratani Dua Tujuh | Pesticide residues 0.08 mg/kg | Border rejection |
| 29 Jan 2021 | AU | Barramundi skin on PT Iambeu Mina Utama | Pesticide residues Enrofloxacin Detected - Not permitted in this food | Border rejection |